Wait until a month before the warranty expires. Use the time in between to find the best surveyor available. I've never seen a new boat that did not have something wrong with it and more that did not show up for a year or two.
Although this is a valid point, I think there is value in identifying major problems even minor ones before accepting the boat and getting them fixed while they are commissioning the vessel. After all, it's a lot harder getting work done after the dealers been paid.
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2007 Hunter 49